CRYSTALP2 - predictor of protein crystallization propensity

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CRYSTALP2 webserver

The server is designed for in-silico prediction of protein crystallization propensity.

References

Upon the usage the users are requested to use the following citation:

• Kurgan LA, Razib AA, Aghakhani S, Dick S, Mizianty MJ, Jahandideh S, 2009. CRYSTALP2: sequence-based protein crystallization propensity prediction. BMC Structural Biology, 9(1): 50.

Materials

Five dataset are used:

• D418 developed by Smialkowski and coworkers (2006) can be be obtained from authors of the SECRET method at http://mips.gsf.de/secret/secret.seam
• FEAT, TEST and TEST-RL developed by Overton and colleagues (2008) these datasets datasets can be downloaded from the authors of ParCrys method at http://compbio.dundee.ac.uk/xtal/
• TEST-NEW that was developed in our lab and can be downloaded from here. The dataset comes as a tab-separated text file with three columns that correspond to sequence id (from either TargetDB or PepcDB), annotation of the class label (crystallizable or noncrystallizable), and sequence.