Editorial for special issue on Machine Learning Models in Protein Bioinformatics, Current Protein and Peptide Science, 12(6):455

]> Lukasz Kurgan LA Yaoqi Zhou Y Editorial for special issue on Machine Learning Models in Protein Bioinformatics, Current Protein and Peptide Science, 12(6):455 papers/CPPS-Editorial2011.pdf 2011 Bentham Science Publishers Arif Wani A Mehmed Kantardzic M Vasile Palade V Lukasz Kurgan LA Alan Qi A Proceedings of the Eight International Conference on Machine Learning and Applications (ICMLA'09) http://ieeexplore.ieee.org/ 2009 812 IEEE Press 978-0-7695-3926-3 Arif Wani A Xue-wen Chen X David Casasent D Lukasz Kurgan LA Tony Hu T Khalid Hafeez K Proceedings of the Seventh International Conference on Machine Learning and Applications (ICMLA'08) http://ieeexplore.ieee.org/ 2008 905 IEEE Press 978-0-7695-3495-4 Krzysztof Cios K Witold Pedrycz W Ryszard Swiniarski R Lukasz Kurgan LA Data Mining: A Knowledge Discovery Approach http://www.springer.com/978-0-387-33333-5 2007 700 Springer 0-387-33333-9 Arif Wani A Mehmed Kantardzic M Tao Li T Ying Liu Y Lukasz Kurgan LA Jieping Ye J Mitsunori Ogihara M Seref Sagiroglu S Xue-wen Chen X Leif Peterson L Khalid Hafeez K Proceedings of the Sixth International Conference on Machine Learning and Applications (ICMLA'07) http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=4457183 2007 638 IEEE Press 0-7695-3069-9 Lukasz Kurgan LA Marek Reformat M Krzysztof Cios KJ Editorial for special issue on Machine Learning in the Life Sciences, IEEE Engineering in Medicine and Biology Magazine, 26(2):14-16 papers/EMB-Editorial2007.pdf 2007 IEEE Press Marek Reformat M Lukasz Kurgan LA Proceedings of the Human Centric Computing and Data Processing (HC2DP 2007) Symposium 2007 25 Arif Wani A Tao Li T Lukasz Kurgan LA Jieping Ye J Ying Liu J Proceedings of the Fifth International Conference on Machine Learning and Applications (ICMLA'06) http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=4041453 2006 303 IEEE Press 0-7695-2735-3 Petr Musilek P Marek Reformat M Lukasz Kurgan LA Editorial for special issue on Biologically Inspired Computing and Computers in Biology, Neural Networks World, 15(3):187 papers/NNW-Editorial2005.pdf 2005 Arif Wani A Mariofanna Milanowa M Lukasz Kurgan LA Marek Reformat M Khalid Hafeez K Proceedings of the Fourth International Conference on Machine Learning and Applications (ICMLA'05) http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=10693 2005 412 IEEE Press 0-7695-2495-8 Scott Dick S Lukasz Kurgan LA Petr Musilek P Witold Pedrycz W Marek Reformat M Proceedings of the 2004 North American Fuzzy Information Proceesing Society (NAFIPS'04) Conference 2004 1024 IEEE Press 0-7803-8376-1 Lukasz Kurgan LA Petr Musilek P Witold Pedrycz W Marek Reformat M Proceedings of the Human Centric Computing (HC2 2005) Symposium 2005 71 Bin Xue B Pedro Romero P Maria Noutsou M Madelon Maurice MM Stefan Rudiger S Albert William Jr. AM Marcin Mizianty MJ Lukasz Kurgan LA Vladimir Uversky VN Keith Dunker AK Stochastic Machines as a Colocalization Mechanism for Scaffold Protein Function FEBS Letters http://www.febsletters.org/ 2013 Elsevier Marcin Mizianty MJ Zhenling Peng Z Lukasz Kurgan LA MFDp2 - Accurate Predictor of Disorder in Proteins by Fusion of Disorder Probabilities, Content and Profiles Intrinsically Disordered Proteins http://www.landesbioscience.com/journals/idp/ 1 1 2013 Landes Bioscience Xiao Fan X Lukasz Kurgan LA Accurate Prediction of Disorder in Protein Chains with a Comprehensive and Empirically Designed Consensus Journal of Biomolecular Structure and Dynamics http://www.tandfonline.com/loi/tbsd20 2013 Taylor and Francis Jing Yan J Max Marcus M Lukasz Kurgan LA Comprehensively Designed Consensus of Standalone Secondary Structure Predictors Improves Q3 by Over 3% Journal of Biomolecular Structure and Dynamics http://www.tandfonline.com/loi/tbsd20 2013 Taylor and Francis Marianne Durand M Svetlana Komarova S Ajay Bhargava A Keying Li K Cara Fiorino K Osama Maria O Noushin Nabavi N Morris Monolson MF Rene Harrison R Jeff Dixon J Stephen Sims SM Marcin Mizianty MJ Lukasz Kurgan LA Sonia Haroun S Gilles Boire G Maria de Fatima Lucena-Fernandes M Artur de Brum-Fernandes AJ Monocytes from Patients with Osteoarthritis Display Increased Osteoclastogenesis and Bone Resorption: The In Vitro Osteoclast Differentiation in Arthritis (IODA) Study Arthritis and Rheumatism 65 1 2013 148 158 Wiley and Sons Dat Nguyen D.T. C.D. Nguyen C.D. R. Hargraves R. Lukasz Kurgan LA Krzysztof Cios KJ mi-DS: Multiple-Instance Learning Algorithm IEEE Transactions on Cybernetics http://www.ieeesmc.org/publications/ 43 1 2013 143 154 IEEE Press Matt Oates ME Pedro Romero P Ishida Wang K Takashi Ishida T Mohamed Ghalwash M Marcin Mizianty MJ Bin Xue B Zsuzsanna Dosztanyi Z Vladimir Uversky V Zoran Obradovic Z Lukasz Kurgan LA A. Keith Dunker AK Julian Gough J D2P2: Database of Disordered Protein Predictions http://nar.oxfordjournals.org/content/41/D1/D508 Nucleic Acids Research http://nar.oxfordjournals.org/ 41 2012 D508 516 Oxford University Press Gang Hu G Jianzhao Gao J Kui Wang K Marcin Mizianty MJ Jishou Ruan J Lukasz Kurgan LA Finding Protein Targets for Small Biologically Relevant Ligands Across Fold Space Using Inverse Ligand Binding Predictions papers/STRUCTURE-InverseBinding2012.pdf Structure http://www.cell.com/structure/ 20 2012 1815 1822 Cell Press Mark Howell M Ryan Green R Alexis Killeen A Lamar Wedderburn L Vincent Picascio V Rabionet Alejandro A Zhenling Peng Z Maya Larina M Bin Xue B Lukasz Kurgan LA Vladimir Uversky V Not that Rigid Midgets and not so Flexible Giants: On the Abundance and Roles of Intrinsic Disorder in Short and Long Proteins papers/JBS-DisorderMidgetsGiants2012.pdf Journal of Biological Systems http://www.worldscientific.com/worldscinet/jbs Genomic Signal Processing 20 4 2012 471 511 World Scientific Fatemeh Miri Disfani F Wei-Lun Hsu W-L Marcin Mizianty MJ Christopher Oldfield CJ Bin Xue B A. Keith Dunker AK Vladimir N Uversky VN Lukasz Kurgan LA MoRFpred, a Computational Tool for Sequence-based Prediction and Characterization of Short Disorder-to-order Transitioning Binding Regions in Proteins http://bioinformatics.oxfordjournals.org/content/28/12/i75.abstract Bioinformatics 28 12 2012 i75 i83 Oxford University Press Jianzhao Gao J Faraggi Eshel E Yaoqi Zhou Y Ruan Jishou J Lukasz Kurgan LA BEST: improved prediction of B-cell epitopes from antigen sequences http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0040104 PLoS ONE http://www.plosone.org/ 7(6): e40104 2012 Public Library of Science images\top_ten.gif Zhenling Peng Z-L Marcin Mizianty MJ Bin Xue B Lukasz Kurgan LA Vladimir N Uversky VN More Than Just Tails: Intrinsic Disorder in Histone Proteins papers/MB-histones-disorder2012.pdf Molecular BioSystems http://pubs.rsc.org/en/journals/journalissues/mb 8 2012 1886 1901 Oxford University Press Bin Xue B Marcin Mizianty MJ Lukasz Kurgan LA Vladimir N Uversky VN Protein Intrinsic Disorder as Flexible Armor and Weapon of HIV-1 papers/CMLS-HIV-1disorder2011.pdf Cellular and Molecular Life Sciences http://www.springer.com/birkhauser/biosciences/journal/18 69 2012 1211 1259 Springer Ke Chen K Marcin Mizianty MJ Lukasz Kurgan LA Prediction and Analysis of Nucleotide Binding Residues Using Sequence and Sequence-derived Structural Descriptors http://bioinformatics.oxfordjournals.org/content/28/3/331.abstract Bioinformatics http://bioinformatics.oxfordjournals.org/ 28 3 2012 331 341 Oxford University Press Marcin Mizianty MJ Lukasz Kurgan LA CRYSpred: Accurate Sequence-Based Protein Crystallization Propensity Prediction Using Sequence-Derived Structural Characteristics papers/PPL-CRYSpred2012.pdf Protein and Peptide Letters http://www.benthamscience.com/ppl/ 19 1 2012 40 49 Bentham Science Hua Zhang H Tuo Zhang T Jianzhao Gao J Jishou Ruan J Shiyi Shen S Lukasz Kurgan LA Determination of Protein Folding Kinetic Types Using Sequence and Predicted Secondary Structure and Solvent Accessibility papers/AA-FOKIT2012.pdf Amino Acids http://www.springerlink.com/content/0939-4451/ 42 2012 271 283 Springer Eshel Faraggi E Tuo Zhang T Yuedong Yang Y Lukasz Kurgan LA Yaoqi Zhou Y SPINE X: Improving Protein Secondary Structure Prediction by Multi-step Learning Coupled with Prediction of Solvent Accessible Surface Area and Backbone Torsion Angles papers/JCC-SPINEX2012.pdf Journal of Computational Chemistry http://journals.wiley.com/0192-8651/ 33 3 2012 259 267 Wiley Zhen-Ling Peng Z-L Lukasz Kurgan LA Comprehensive Comparative Assessment of In-silico Predictors of Disordered Regions papers/CPPS-DisorderReview2012.pdf Current Protein and Peptide Science http://www.bentham.org/cpps/ Intrinsically Disordered Proteins 13 2012 6 18 Bentham Science Publishers Wojciech Stach W Witold Pedrycz W Lukasz Kurgan LA Learning of Fuzzy Cognitive Maps Using Density Estimate papers/IEEETSMCB-SparseFCM2012.pdf IEEE Transactions on Systems, Man, and Cybernetics, Part B http://www.ieeesmc.org/publications/ 42 3 2012 900 912 IEEE Press Marcin Mizianty MJ Lukasz Kurgan LA Sequence-based Prediction of Protein Crystallization, Purification, and Production Propensity http://bioinformatics.oxfordjournals.org/content/27/13/i24.full Bioinformatics http://bioinformatics.oxfordjournals.org/ 27 13 2011 i24 i33 Oxford University Press images/highly_accessed.gif Marcin Mizianty MJ Tuo Zhang T Bin Xue B Yaoqi Zhou Y A. Keith Dunker AK Vladimir N Uversky VN Lukasz Kurgan LA In-silico prediction of disorder content using hybrid sequence representation http://www.biomedcentral.com/1471-2105/12/245/abstract BMC Bioinformatics http://www.biomedcentral.com/bmcbioinformatics 12:245 2011 BMC Central Ke Chen K Marcin Mizianty MJ Jianzhao Gao J Lukasz Kurgan LA A Critical Comparative Assessment of Predictions of Protein Binding Sites for Biologically Relevant Organic Compounds papers/STRUCTURE-BindingSitePredictions2011.pdf Structure http://www.cell.com/structure/ 19 5 2011 613 621 Cell Press Ke Chen K Marcin Mizianty MJ Lukasz Kurgan LA ATPsite: Sequence-based Prediction of ATP-binding Residues http://www.proteomesci.com/content/9/S1/S4 Proteome Science http://www.proteomesci.com/ 9(Suppl. 1):S4 2011 BioMed Central Hua Zhang H Tuo Zhang T Ke Chen K Kanaka Durga Kedarisetti KD Marcin J. Mizianty MJ Qingbo Bao Q Wojciech Stach W Lukasz Kurgan LA Critical Assessment of High-throughput Standalone Methods for Secondary Structure Prediction http://bib.oxfordjournals.org/cgi/reprint/bbq088 Briefings in Bioinformatics http://bib.oxfordjournals.org/ 12 6 2011 672 688 Oxford University Press Kanaka Durga Kedarisetti KD Marcin Mizianty MJ Scott Dick S Lukasz Kurgan LA Improved Sequence-based Prediction of Strand Residues http://www.worldscinet.com/jbcb/09/0901/S0219720011005355.html Journal of Bioinformatics and Computational Biology http://www.worldscinet.com/jbcb/jbcb.shtml 9 1 2011 67 89 World Scientific Marcin Mizianty MJ Lukasz Kurgan LA Improved Identification of Outer Membrane Beta Barrel Proteins Using Primary Sequence, Predicted Secondary Structure and Evolutionary Information http://onlinelibrary.wiley.com/doi/10.1002/prot.22882/abstract Proteins: Structure, Function, and Bioinformatics http://www3.interscience.wiley.com/journal/36176/home 79 1 2011 294 303 Wiley-Blackwell Marianne Durand M Gilles Boire G Svetlana Komarova S Jeff Dixon J Stephen Sims SM Rene Harrison R N Nabavi N Osama Maria O Morris Monolson MF Marcin Mizianty MJ Lukasz Kurgan LA Artur de Brum-Fernandes AJ The Increased In Vitro Osteoclastogenesis in Patients with Rheumatoid Arthritis is Due to Increased Percentage of Precursors and Decreased Apoptosis - The In Vitro Osteoclast Differentiation in Arthritis (Ioda) Study http://authors.elsevier.com/redirect/http://dx.doi.org/10.1016/j.bone.2010.10.167 Bone http://www.sciencedirect.com/science/journal/87563282 48 2011 588 596 Elsevier Ke Chen K Wojciech Stach W Leila Homaeian L Lukasz Kurgan LA iFC2: An Integrated Web-server for Improved Prediction of Protein Structural Class, Fold Type, and Secondary Structure Content http://springerlink.com/content/q4jn6228517t10pq/ Amino Acids http://www.springerlink.com/content/0939-4451/ 40 3 2011 963 973 Springer Lukasz Kurgan LA Fatemeh Miri Disfani F Structural Protein Descriptors in 1-Dimension and Their Sequence-Based Predictions papers/CPPS-Review1Ddescriptors2011.pdf Current Protein and Peptide Science http://www.bentham.org/cpps/ Machine Learning Models in Protein Bioinformatics 12 6 2011 470 489 Bentham Science Publishers Marcin Mizianty MJ Wojciech Stach W Ke Chen K Kanaka Durga Kedarisetti KD Fatemeh Miri Disfani F Lukasz Kurgan LA Improved Sequence-based Prediction of Disordered Regions with Multilayer Fusion of Multiple Information Sources http://bioinformatics.oxfordjournals.org/content/26/18/i489.full Bioinformatics http://bioinformatics.oxfordjournals.org/ 26 18 2010 i489 i496 Oxford University Press Jianzhao Gao J Tuo Zhang T Hua Zhang H Shiyi Shen S Jishou Ruan J Lukasz Kurgan LA Accurate Prediction of Protein Folding Rates from Sequence and Sequence-derived Residue Flexibility and Solvent Accessibility papers/PROTEINS-PFRAF2010.pdf Proteins: Structure, Function, and Bioinformatics http://www3.interscience.wiley.com/journal/36176/home 78 9 2010 2114 2130 Wiley-Blackwell Tuo Zhang T Hua Zhang H Ke Chen K Jishou Ruan J Shiyi Shen S Lukasz Kurgan LA Analysis and Prediction of RNA-Binding Residues Using Sequence, Evolutionary Conservation, and Predicted Secondary Structure and Solvent Accessibility papers/CPPS-RNAbinding2010.pdf Current Protein and Peptide Science http://www.bentham.org/cpps/ Protein Folding, Stability and Interactions 11 7 2010 609 628 Bentham Science Publishers Joo-Heon Shin J-H Dave Smith D Waldemar Swiercz W Kevin Staley K Terry Rickard K Javier Montero F Lukasz Kurgan LA Krzysztof Cios K Recognition of Partially Occluded and Rotated Images with a Network of Spiking Neurons IEEE Transactions on Neural Networks http://www.ieee.org/organizations/pubs/transactions/tnn.htm 21 11 2010 1697 1709 IEEE Press Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W A Divide and Conquer Method for Learning Large Fuzzy Cognitive Maps papers/FSS-div_and_conq2010.pdf Fuzzy Sets and Systems http://www.elsevier.com/locate/issn/01650114 161 19 2010 2515 2532 Elsevier Scott Bass SD Lukasz Kurgan LA Discovery of Factors Influencing Patent Value Based on Machine Learning in Patents in the Field of Nanotechnology papers/Scientometrics-MLnano2010.pdf Scientometrics http://www.kluweronline.com/issn/0138-9130/ 82 2 2010 217 241 Springer Marcin Mizianty MJ Lukasz Kurgan LA Marek Ogiela M Discretization as the Enabling Technique for the Naive Bayes and Semi-Naive Bayes Based Classification papers/KER-NBDiscretization.pdf Knowledge Engineering Review http://journals.cambridge.org/action/displayJournal?jid=ker 25 4 2010 421 449 Cambridge University Press images/highly_accessed.gif Marcin Mizianty MJ Lukasz Kurgan LA Modular Prediction of Protein Structural Classes from Sequences of Twilight-Zone Identity with Predicting Sequences http://www.biomedcentral.com/1471-2105/10/414 BMC Bioinformatics http://www.biomedcentral.com/bmcbioinformatics/ 10:414 2009 BioMed Central Marcin Mizianty MJ Lukasz Kurgan LA Meta Prediction of Protein Crystallization Propensity papers/BBRC-MetaPPCP2009.pdf Biochemical and Biophysical Research Communications http://www.elsevier.com/locate/issn/0006291X 390 1 2009 10 15 Elsevier Lukasz Kurgan LA Marcin Mizianty MJ Sequence-Based Protein Crystallization Propensity Prediction for Structural Genomics: Review and Comparative Analysis papers/NS-ProteinCrystallization2009.pdf Natural Science http://www.scirp.org/journal/ns/ 1 2 2009 93 106 Scientific Research images/highly_accessed.gif Lukasz Kurgan LA Ali Razib AA Sara Aghakhani S Scott Dick S Marcin Mizianty MJ Samad Jahandideh S CRYSTALP2: Sequence-based Protein Crystallization Propensity Prediction http://www.biomedcentral.com/1472-6807/9/50 BMC Structural Biology https://www.biomedcentral.com/bmcstructbiol/ 9:50 2009 BioMed Central Ke Chen K Lukasz Kurgan LA Investigation of Atomic Level Patterns in Protein - Small Ligand Interactions http://dx.plos.org/10.1371/journal.pone.0004473 PLoS ONE http://www.plosone.org/ 4(2):e4473 2009 Public Library of Science Hua Zhang H Tuo Zhang T Ke Chen K Shiyi Shen S Jishou Ruan J Lukasz Kurgan LA On the Relation between Residue Flexibility and Local Solvent Accessibility in Proteins papers/PROTEINS-FlexibilitySolventAccessibility.pdf Proteins: Structure, Function, and Bioinformatics http://www3.interscience.wiley.com/journal/36176/home 76 3 2009 617 636 Wiley Yingfu Jiang Y Paul Iglinski P Lukasz Kurgan LA Prediction of Protein Folding Rates from Primary Sequences using Hybrid Sequence Representation papers/JCC-PPFR2009.pdf Journal of Computational Chemistry http://www.interscience.wiley.com/jpages/0192-8651/ 30 5 2009 772 783 Wiley Ke Chen K Yingfu Jiang Y Li Du L Lukasz Kurgan LA Prediction of Integral Membrane Protein Type by Collocated Hydrophobic Amino Acid Pairs papers/JCC-IMPtype2009.pdf Journal of Computational Chemistry http://www.interscience.wiley.com/jpages/0192-8651/ 30 1 2009 163 172 Wiley Allison S Gehrke AS Shaojun Sun S Lukasz Kurgan LA Natalie Ahn N Katheryn Resing K Karen Kafadar K Krzysztof Cios KJ Improved Machine Learning Method for Analysis of Gas Phase Chemistry of Peptides http://www.biomedcentral.com/1471-2105/9/515 BMC Bioinformatics http://www.biomedcentral.com/bmcbioinformatics/ 9:515 2008 BioMed Central images/highly_accessed.gif Ce Zheng C Lukasz Kurgan LA Prediction of ß-turns at Over 80% Accuracy Based on an Ensemble of Predicted Secondary Structures and Multiple Alignments http://www.biomedcentral.com/1471-2105/9/430 BMC Bioinformatics http://www.biomedcentral.com/bmcbioinformatics/ 9:430 2008 BioMed Central Tuo Zhang T Hua Zhang H Ke Chen K Shiyi Shen S Jishou Ruan J Lukasz Kurgan LA Accurate Sequence-based Prediction of Catalytic Residues http://bioinformatics.oxfordjournals.org/cgi/content/full/24/20/2329 Bioinformatics http://bioinformatics.oxfordjournals.org/ 24 20 2008 2329 2338 Oxford University Press images/highly_accessed.gif Jishou Ruan J Hanzhe Chen H Lukasz Kurgan LA Ke Chen K Chunsheng Kang C Peiyu Pu P HuMiTar: A sequence-based Method for Prediction of Human microRNA Targets http://www.almob.org/content/3/1/16 Algorithms for Molecular Biology http://www.almob.org/ 3:16 2008 BioMed Central images/highly_accessed.gif Hua Zhang H Tuo Zhang T Ke Chen K Shiyi Shen S Jishou Ruan J Lukasz Kurgan LA Sequence Based Residue Depth Prediction Using Evolutionary Information and Predicted Secondary Structure http://www.biomedcentral.com/1471-2105/9/388 BMC Bioinformatics http://www.biomedcentral.com/bmcbioinformatics/ 9:388 2008 BioMed Central Ke Chen K Torin Huzil T Holly Friedman H Parameswaran Ramachandran P Andreas Antoniou A Jack Tuszynski J Lukasz Kurgan LA Identification of Tubulin Drug Binding Sites and Prediction of Relative Differences in Binding Affinities to Tubulin Isotypes Using Digital Signal Processing http://linkinghub.elsevier.com/retrieve/pii/S1093326308001046 Journal of Molecular Graphics and Modelling http://www.elsevier.com/locate/jmgm/ 27 4 2008 497 505 Elsevier Lukasz Kurgan LA Krzysztof Cios KJ Hua Zhang H Tuo Zhang T Ke Chen K Shiyi Shen S Jishou Ruan J Sequence-based Methods for Real Value Predictions of Protein Structure papers/CBIO-RealValuePrediction2008.pdf Current Bioinformatics http://www.bentham.org/cbio/index.htm 3 3 2008 183 196 Bentham Science Kevin Campbell K Lukasz Kurgan LA Sequence-only Based Prediction of ß-turn Location and Type Using Collocation of Amino Acid Pairs papers/OBJ-BetaTurns2008.pdf Open Bioinformatics Journal http://www.bentham.org/open/tobioij/index.htm 2 2008 37 49 Bentham Science images/highly_accessed.gif Lukasz Kurgan LA Krzysztof Cios KJ Ke Chen K SCPRED: Accurate Prediction of Protein Structural Class for Sequences of Twilight-zone Similarity with Predicting Sequences http://www.biomedcentral.com/1471-2105/9/226 BMC Bioinformatics http://www.biomedcentral.com/bmcbioinformatics/ 9:226 2008 BioMed Central Alireza Farhangfar A Lukasz Kurgan LA Jennifer Dy J Impact of Imputation of Missing Values on Classification Error for Discrete Data papers/PR-ImputationClassification2008.pdf Pattern Recognition http://www.elsevier.com/locate/pr 41 12 2008 3692 3705 Elsevier Ke Chen K Michal Kurgan M Lukasz Kurgan LA Sequence Based Prediction of Relative Solvent Accessibility Using Two-stage Support Vector Regression with Confidence Values papers/JBiSE-SolventAccessibity2008.pdf Journal of Biomedical Science and Engineering http://www.srpublishing.org/website/journal/jbise/ 1 1 2008 1 9 Scientific Research Publishing Lukasz Kurgan LA Tuo Zhang T Hua Zhang H Shiyi Shen S Jishou Ruan J Secondary Structure Based Assignment of the Protein Structural Classes papers/AA2008-SCOPclass.pdf Amino Acids http://www.springerlink.com/content/0939-4451/ 35 3 2008 551 564 Springer Kanaka Kedarisetti K Scott Dick S Lukasz Kurgan LA Searching for Factors that Distinguish Disease-prone and Disease-resistant Prions via Sequence Analysis papers/BBI-Prions2008.pdf Bioinformatics and Biology Insights http://la-press.com/journal.php?journal_id=39 2 2008 133 144 Libertas Academica Seyed Koosha Golmohammadi SK Lukasz Kurgan LA Brendan Crowley B Marek Reformat M Amino Acid Sequence Based Method for Prediction of Cell Membrane Protein Types papers/IJHIT-CellMembraneType2008.pdf International Journal of Hybrid Information Technology http://www.sersc.org/journals/IJHIT/ 1 1 2008 95 109 SERSC Ke Chen K Lukasz Kurgan LA Jishou Ruan J Prediction of Protein Structural Class Using Novel Evolutionary Collocation Based Sequence Representation papers/JCC-SCcollocation2008.pdf Journal of Computational Chemistry http://www.interscience.wiley.com/jpages/0192-8651/ 29 10 2008 1596 1604 Wiley Lukasz Kurgan LA On the Relation between the Predicted Secondary Structure and the Protein Size papers/PJ-SSandProteinSize2008.pdf Protein Journal http://www.springerlink.com/content/1573-4943/ 24 4 2008 234 239 Springer Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Numerical and Linguistic Prediction of Time Series with the Use of Fuzzy Cognitive Maps papers/TFS-FSM2008.pdf IEEE Transactions on Fuzzy Systems 16 1 2008 61 72 IEEE Press Rafal Rak R Lukasz Kurgan LA Marek Reformat M A Tree-projection-based Algorithm for Multi-label Recurrent-item Associative-Classification Rule Generation papers/DKE-AssociativeClassification2008.pdf Data and Knowledge Engineering http://www.elsevier.com/wps/find/journaldescription.cws_home/505608/description 64 1 2008 171 197 Elsevier Ke Chen K Lukasz Kurgan LA PFRES: Protein Fold Classification by Using Evolutionary Information and Predicted Secondary Structure http://bioinformatics.oxfordjournals.org/cgi/reprint/23/21/2843 Bioinformatics http://bioinformatics.oxfordjournals.org/ 23 21 2007 2843 2850 Oxford University Press images/highly_accessed.gif Ke Chen K Lukasz Kurgan LA Jishou Ruan J Prediction of Flexible/Rigid Regions in Proteins from Sequences Using Collocated Amino Acid Pairs http://www.biomedcentral.com/content/pdf/1472-6807-7-25.pdf BMC Structural Biology https://www.biomedcentral.com/bmcstructbiol/ 7:25 2007 BioMed Central Lukasz Kurgan LA Ke Chen K Prediction of Protein Structural Class for the Twilight Zone Sequences papers/BBRC-LLSC-PRED2007.pdf Biochemical and Biophysical Research Communications http://www.elsevier.com/locate/issn/0006291X 357 2 2007 453 460 Elsevier Rafal Rak R Lukasz Kurgan LA Marek Reformat M xGENIA: A comprehensive OWL ontology based on the GENIA corpus papers/BIOINF-xGenia2007.pdf Bioinformation http://www.bioinformation.net/ 1 9 2007 360 362 Biomedical Informatics Publishing Group Leila Homaeian L Lukasz Kurgan LA Krzysztof Cios KJ Jishou Ruan J Ke Chen K Prediction of Protein Secondary Structure Content for the Twilight Zone Sequences papers/PROTEINS-PSSCcore.pdf Proteins: Structure, Function, and Bioinformatics http://www3.interscience.wiley.com/journal/36176/home 69 3 2007 486 498 Wiley Ke Chen K Lukasz Kurgan LA Mandana Rahbari M Prediction of Protein Crystallization Using Collocation of AA pairs papers/BBRC-Crystallization2007.pdf Biochemical and Biophysical Research Communications http://www.elsevier.com/locate/issn/0006291X 355 3 2007 764 769 Elsevier Torin Huzil T Ke Chen K Lukasz Kurgan LA Jack Tuszynski J The Roles of Beta-Tubulin Mutations and Isotype Expression in Acquired Drug Resistance papers/CINF-Tubulin2007.pdf Cancer Informatics http://www.la-press.com/caninfo.htm 3 2007 159 181 Libertas Academica Rafal Rak R Lukasz Kurgan LA Marek Reformat M Multilabel Associative Classification Categorization of MEDLINE Articles into MeSH Keywords papers/EMB-AssociativeClassification2007.pdf IEEE Engineering in Medicine and Biology Magazine http://www.ieee.org/organizations/pubs/magazines/emb.htm Machine Learning in the Life Sciences 26 2 2007 47 55 IEEE Press Lukasz Kurgan LA Wojciech Stach W Jishou Ruan J Novel Scales Based on Hydrophobicity Indices for Secondary Protein Structure papers/JTB-Hydro2007.pdf Journal of Theoretical Biology http://www.elsevier.com/locate/issn/00225193/ 248 2 2007 354 366 Elsevier Alireza Farhangfar A Lukasz Kurgan LA Witold Pedrycz W A Novel Framework for Imputation of Missing Values in Databases papers/SMCA-Imputation2007.pdf IEEE Transactions on Systems, Man, and Cybernetics, Part A http://www.ieeesmc.org/publications/ 37 5 2007 692 709 IEEE Press Lukasz Kurgan LA Kanaka Kedarisetti K Sequence Representation and Prediction of Protein Secondary Structure for Structural Motifs in Twilight Zone Proteins papers/PJ-SFs2006.pdf Protein Journal http://www.springerlink.com/content/1573-4943/ 25 7-8 2006 463 474 Springer Kanaka Kedarisetti K Lukasz Kurgan LA Scott Dick S Classifier Ensembles for Protein Structural Class Prediction with Varying Homology papers/BBRC-Ensemble2006.pdf Biochemical and Biophysical Research Communications http://www.elsevier.com/locate/issn/0006291X 348 3 2006 981 988 Elsevier Kanaka Kedarisetti K Lukasz Kurgan LA Scott Dick S A Comment on 'Prediction of protein structural classes by a new measure of information discrepancy' papers/CBC-Comment2006.pdf Computational Biology and Chemistry http://www.elsevier.com/locate/issn/14769271 30 5 2006 393 394 Elsevier Jishou Ruan J Ke Chen K Jack Tuszynski J Lukasz Kurgan LA Quantitative Analysis of the Conservation of the Tertiary Structure of Protein Segments papers/PJ-Conservation2006.pdf Protein Journal http://www.springerlink.com/content/1573-4943/ 25 5 2006 301 315 Springer Ke Chen K Jishou Ruan J Lukasz Kurgan LA Prediction of Three Dimensional Structure of Calmodulin papers/PJ-Calmodulin2006.pdf Protein Journal http://www.springerlink.com/content/1573-4943/ 25 1 2006 57 70 Springer Lukasz Kurgan LA Leila Homaeian L Prediction of Structural Classes for Protein Sequences and Domains - Impact of Prediction Algorithms, Sequence Representation and Homology, and Test Procedures on Accuracy papers/PR-ProteinStructuralClasses2006.pdf Pattern Recognition http://www.elsevier.com/locate/pr Bioinformatics 39 12 2006 2323 2343 Elsevier Waldemar Swiercz W Krzysztof Cios KJ Kevin Staley K Lukasz Kurgan LA Frank Accurso F Scott Sagel S A New Synaptic Plasticity Rule for Networks of Spiking Neurons IEEE Transactions on Neural Networks http://www.ieee.org/organizations/pubs/transactions/tnn.htm 17 1 2006 94 105 IEEE Press images/top10.gif Lukasz Kurgan LA Petr Musilek P A Survey of Knowledge Discovery and Data Mining Process Models papers/KER-KDDM2006.pdf Knowledge Engineering Review http://journals.cambridge.org/action/displayJournal?jid=ker 21 1 2006 1 24 Cambridge University Press Lukasz Kurgan LA Krzysztof Cios KJ Scott Dick S Highly Scalable and Robust Rule Learner: Performance Evaluation and Comparison papers/SMCB-DS2006.pdf IEEE Transactions on Systems, Man, and Cybernetics, Part B http://www.ieeesmc.org/publications/ 36 1 2006 32 53 IEEE Press images/top25_AIM2005.gif Jishou Ruan J K. Wang K J. Yang J Lukasz Kurgan LA Krzysztof Cios KJ Highly Accurate and Consistent Method for Prediction of Helix and Strand Content from Primary Protein Sequences papers/AIM-CONTENT2005.pdf Artificial Intelligence in Medicine http://www.elsevier.com/locate/artmed Computational Intelligence Techniques in Bioinformatics 35 1-2 2005 19 35 Elsevier images/top25_FSS2005.gif Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Marek Reformat M Genetic Learning of Fuzzy Cognitive Maps papers/FSS-FCM2005.pdf Fuzzy Sets and Systems http://www.elsevier.com/locate/issn/01650114 153 3 2005 371 401 Elsevier Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Marek Reformat M Learning Fuzzy Cognitive Maps with Required Precision using Genetic Algorithm Approach papers/EL-FCM.pdf Electronics Letters http://www.iee.org/Publish/Journals/ProfJourn/JournEL/index.cfm 40 24 2004 1519 1520 IEE Press Lukasz Kurgan LA Krzysztof Cios KJ CAIM Discretization Algorithm papers/TKDE-CAIM2004.pdf IEEE Transactions on Data and Knowledge Engineering http://www.computer.org/tkde/ 16 2 2004 145 153 IEEE Press Krzysztof Cios KJ Lukasz Kurgan LA CLIP4: Hybrid Inductive Machine Learning Algorithm that Generates Inequality Rules papers/IS-CLIP4.pdf Information Sciences http://www.elsevier.com/inca/publications/store/5/0/5/7/3/0/ Soft Computing Data Mining 163 1-3 2004 37 83 Elsevier Lukasz Kurgan LA Krzysztof Cios KJ Ryszard Tadeusiewicz R Marek Ogiela M Lucy Goodenday LS Knowledge Discovery Approach to Automated Cardiac SPECT Diagnosis papers/AIM-SPECT2001.pdf Artificial Intelligence in Medicine http://www.elsevier.com/locate/artmed 23 2 2001 149 169 Elsevier Ke Chen K Lukasz Kurgan LA Computational Prediction of Secondary and Supersecondary Structures papers/chapterSuperSecondaryStructure2012.pdf Alexander Kister A Methods in Molecular Biology link.springer.com/book/10.1007/978-1-62703-065-6/ 2013 932:63 86 Humana Press (ISBN 978-1-62703-064-9) Ke Chen K Lukasz Kurgan LA Neural Networks in Bioinformatics papers/chapterNNbioinformatics.pdf Grzegorz Rozenberg R Thomas Baeck T Joost Kok J Handbook of Natural Computing http://www.springer.com/computer/theoretical+computer+science/book/978-3-540-92911-6 2012 565 583 Springer (ISBN 978-3-540-92909-3) Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Expert-Based and Computational Methods for Developing Fuzzy Cognitive Maps papers/chapterMethodsFCM2010.pdf M Glykas M Advances in Theory, Methodologies, Tools and Applications, Studies in Fuzziness and Soft Computing, vol. 247 https://www.springer.com/engineering/book/978-3-642-03219-6 2010 23 41 Springer (ISBN 978-3-642-03219-6) Krzysztof Cios KJ Lukasz Kurgan LA Machine Learning Algorithms Inspired by the work of Ryszard Spencer Michalski papers/chapterMichalski2010.pdf J Koronacki J ZW Ras ZW ST Wierzchon ST Janusz Kacprzyk J Advances in Machine Learning I (In memoriam of Prof. Ryszard S. Michalski), Studies in Computational Intelligence vol. 262 http://www.springer.com/engineering/book/978-3-642-05176-0 2010 49 74 Springer (ISBN 978-3-642-05176-0) Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W A Survey of Fuzzy Cognitive Map Learning Methods papers/chapterSurveyFCM2003.pdf Przemyslaw Grzegorzewski P Maciej Krawczak M Slawomir Zadrozny S Issues in Soft Computing: Theory and Applications http://www.exit.pl/issues4.htm 2005 71 84 Exit (ISBN 83-87674-98-2) Lukasz Kurgan LA Krzysztof Cios KJ Marci Sontag M Frank Accurso F Mining the Cystic Fibrosis Data papers/chapterCF2005.pdf Jacek Zurada J Mehmed Kantardzic M Next Generation of Data-Mining Applications http://ca.wiley.com/WileyCDA/WileyTitle/productCd-0471656054.html 2005 415 444 IEEE Press - Wiley (ISBN 0-471-65605-4) Krzysztof Cios KJ Lukasz Kurgan LA Trends in Data Mining and Knowledge Discovery papers/chapterTrendsDM2003.pdf Nikhil Pal NR Lakhmi Jain LC Advanced Techniques in Knowledge Discovery and Data Mining http://www.springeronline.com/sgw/cda/frontpage/0,11855,5-146-22-33835058-0,00.html 2005 1 26 Springer (ISBN 1-85233-867-9) Krzysztof Cios KJ Lukasz Kurgan LA Hybrid Inductive Machine Learning: An Overview of CLIP Algorithms papers/chapterCLIP42001.pdf Lakhmi Jain LC Janusz Kacprzyk J New Learning Paradigms in Soft Computing http://www.springer.de/cgi-bin/search_book.pl?isbn=3-7908-1436-9/ 2002 276 322 Springer (ISBN 3-7908-1436-9) Zhenling Peng Z Lukasz Kurgan LA On the Complementarity of the Consensus-based Disorder Prediction papers/PSB2012.pdf Pacific Symposium on Biocomputing PSB 2012 2012 17:176 187 PSB Big Island of Hawaii Hawaii U.S.A. Ke Chen K Marcin Mizianty MJ Lukasz Kurgan LA Accurate Prediction of ATP-binding Residues Using Sequence and Sequence derived Structural Descriptors papers/BIBM2010.pdf IEEE International Conference on Bioinformatics and Biomedicine BIBM 2010 2010 43 48 IEEE Hong Kong PRC Rafal Rak R Lukasz Kurgan LA Marek Reformat M Use of OWL 2 to Facilitate a Biomedical Knowledge Base Extracted from the GENIA Corpus papers/OWLED2008.pdf 5th International Workshop on OWL: Experiences and Directions (co-located with the 7th International Semantic Web Conference) OWLED'08 2008 Karlsruhe Germany Marcin Mizianty MJ Lukasz Kurgan LA Marek Ogiela M Comparative Analysis of the Impact of Discretization on the Classification with Naive Bayes and Semi-Naive Bayes Classifiers papers/ICMLA2008.pdf 7th International Conference on Machine Learning and Applications ICMLA'08 2008 823 828 IEEE Press San Diego CA U.S.A. Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Data-Driven Nonlinear Hebbian Learning Method for Fuzzy Cognitive Maps papers/WCCI2008.pdf IEEE International Conference on Fuzzy Systems (IEEE World Congress on Computational Intelligence) FUZZ-IEEE'08 2008 1975 1981 IEEE Press Hong Kong China Seyed Koosha Golmohammadi SK Lukasz Kurgan LA Brendan Crowley B Marek Reformat M Classification of Cell Membrane Proteins papers/FBIT2007.pdf Frontiers in the Convergence of Bioscience and Information Technologies 2007 FBIT'07 2007 153 159 IEEE Press Jeju Island Korea Ke Chen K Michal Kurgan M Lukasz Kurgan LA Improved Prediction of Relative Solvent Accessibility Using Two-stage Support Vector Regression papers/IEEEBBE07-2.pdf 1st International Conference on Bioinformatics and Biomedical Engineering ICBBE'07 2007 37 40 IEEE Press Wuhan China Ke Chen K Lukasz Kurgan LA Jishou Ruan J Prediction of Protein Structural Class Using PSI-BLAST Profile Based Collocation of Amino Acid Pairs papers/IEEEBBE07-1.pdf 1st International Conference on Bioinformatics and Biomedical Engineering ICBBE'07 2007 17 20 IEEE Press Wuhan China Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Parallel Learning of Large Fuzzy Cognitive Maps papers/IJCNN2007.pdf 2007 International Joint Conference on Neural Networks IJCNN'07 2007 1584 1589 IEEE Press Orlando FL U.S.A. Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W A Framework for a Novel Scalable Fuzzy Cognitive Map Learning Method papers/HC2DP-2007.pdf Symposium on Human-Centric Computing and Data Processing HC2DP'07 2007 13 14 Banff Alberta Canada Lukasz Kurgan LA Mandana Rahbari M Leila Homaeian L Impact of the Predicted Protein Structural Content on Prediction of Structural Classes for the Twilight Zone Proteins papers/ICMLA2006.pdf 5th International Conference on Machine Learning and Applications, Special Session on Applications of Machine Learning in Medicine and Biology ICMLA'06 2006 180 186 IEEE Press Orlando FL U.S.A. Ke Chen K Lukasz Kurgan LA Jishou Ruan J Optimization of the Sliding Window Size for Protein Structure Prediction papers/CIBCB2006-1.pdf 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology CIBCB'06 2006 366 372 IEEE Press Toronto Ontario Canada Kanaka Durga Kedarisetti K Ke Chen K Aashima Kapoor A Lukasz Kurgan LA Prediction of the Number of Helices for the Twilight Zone Proteins papers/CIBCB2006-2.pdf 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology CIBCB'06 2006 459 465 IEEE Press Toronto Ontario Canada Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Higher-Order Fuzzy Cognitive Maps papers/NAFIPS2006.pdf 2006 North American Fuzzy Information Processing Society Conference NAFIPS'06 2006 166 171 IEEE Press Montreal Quebec Canada Rafal Rak R Lukasz Kurgan LA Marek Reformat M Multi-label Associative Classification of Medical Documents from MEDLINE papers/ICMLA2005.pdf International Conference on Machine Learning and Applications ICMLA'05 2005 177 184 IEEE Press Los Angeles CA U.S.A. Lukasz Kurgan LA Leila Homaeian L Prediction of Secondary Protein Structure Content from Primary Sequence Alone - a Feature Selection Based Approach papers/MLDM2005.pdf International Conference on Machine Learning and Data Mining in Pattern Recognition MLDM'05 2005 334 345 Springer Verlag, LNAI 4587 Leipzig Germany Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Marek Reformat M Evolutionary Development of Fuzzy Cognitive Maps papers/FUZZIEEE2005.pdf 2005 IEEE International Conference on Fuzzy Systems FUZZ IEEE'05 2005 619 624 IEEE Press Reno NV U.S.A. Lukasz Kurgan LA Kanaka Kedarisetti K Secondary Protein Structure Fragments - Feasibility Study in Prediction and Analysis papers/HC2-2005a.pdf Symposium on Human-Centric Computing HC2'05 2005 26 36 Banff Alberta Canada Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Linguistic Signal Prediction with the use of Fuzzy Cognitive Maps papers/HC2-2005b.pdf Symposium on Human-Centric Computing HC2'05 2005 64 71 Banff Alberta Canada Lukasz Kurgan LA Reducing Complexity of Rule Based Models via Meta Mining papers/ICMLA2004.pdf 2004 International Conference on Machine Learning and Applications ICMLA'04 2004 242 249 CSREA Press Lousville KY U.S.A. Lukasz Kurgan LA Krzysztof Cios KJ Meta Mining Architecture for Supervised Learning papers/HPDM2004.pdf 7th International Workshop on High Performance and Distributed Mining HPDM'04 4th International SIAM Conference on Data Mining 2004 18 26 Lake Buena Vista FL U.S.A. Lukasz Kurgan LA Scott Dick S Petr Musilek P Marek Reformat M Shaping the Software Option at the University of Alberta papers/C3SEE2004.pdf 2004 IEEE Canadian Conference on Computer and Software Engineering Education C3SEE'04 2004 97 103 Calgary AB Canada Wojciech Stach W Lukasz Kurgan LA Witold Pedrycz W Marek Reformat M Fuzzy Cognitive Maps as a Tool for Modeling Parallel Software Development Projects papers/NAFIPS2004.pdf 2004 North American Fuzzy Information Processing Society Conference NAFIPS'04 2004 28 33 IEEE Press Banff Alberta Canada Alireza Farhangfar A Lukasz Kurgan LA Witold Pedrycz W Experimental Analysis of Methods for Handling Missing Values in Databases papers/SPIE2004.pdf Intelligent Computing: Theory and Applications II Conference ICTA II SPIE Defense and Security Symposium (formerly AeroSense) 2004 172 182 SPIE Press Orlando FL U.S.A. Yifan Li Y. Petr Musilek P Lukasz Kurgan LA Battlecity Revived: Game Design with BDI.net papers/QSSE2004b.pdf 4th ASERC Workshop on Quantitative and Soft Software Engineering QSSE'04 2004 24 28 Banff Alberta Canada Wojciech Stach W Lukasz Kurgan LA Modeling Software Development Projects Using Fuzzy Cognitive Maps papers/QSSE2004a.pdf 4th ASERC Workshop on Quantitative and Soft Software Engineering QSSE'04 2004 55 60 Banff Alberta Canada Lukasz Kurgan LA Krzysztof Cios KJ Fast Class-Attribute Interdependence Maximization (CAIM) Discretization Algorithm papers/ICMLA2003.pdf 2003 International Conference on Machine Learning and Applications ICMLA'03 2003 30 36 CSREA Press Los Angeles CA U.S.A. Lukasz Kurgan LA Krzysztof Cios KJ Ensemble of Classifiers to Improve Accuracy of the CLIP4 Machine Learning Algorithm papers/AeroSense2002.pdf SPIE International Conference on Sensor Fusion: Architectures, Algorithms, and Applications VI ICSF: AAA VI SPIE AeroSense Symposium 2002 22 31 SPIE Press Orlando FL U.S.A. Lukasz Kurgan LA Waldemar Swiercz W Krzysztof Cios KJ Semantic Mapping of XML Tags Using Inductive Machine Learning papers/ICMLA2002.pdf 2002 International Conference on Machine Learning and Applications ICMLA'02 2002 99 109 CSREA Press Las Vegas NV U.S.A. Lukasz Kurgan LA Krzysztof Cios KJ Michael Trombley M The WWW Based Data Mining Toolbox Architecture papers/ICNNSC2002.pdf 6th International Conference on Neural Networks and Soft Computing ICNNSN'02 2002 855 860 Springer Verlag Zakopane Poland Lukasz Kurgan LA Krzysztof Cios KJ Discretization Algorithm that Uses Class-Attribute Interdependence Maximization papers/IC-AI2001.pdf 2001 International Conference on Artificial Intelligence IC-AI'01 2001 980 987 Las Vegas NV U.S.A. Lukasz Kurgan LA Disorder in Proteins: Abundance and Functional Characterization in 1000 Proteomes across the Three Domains of Life and Viruses papers/presentationBIT2012.pdf Bioinformatics in Torun (BIT 2012) Conference http://ptbi.org.pl/BIT12/ 2012 September Torun Poland Lukasz Kurgan LA Disorder in Proteins: Functional Lack of Structure papers/presentationDisorder2012.pdf Chern Institute of Mathematics at the Nankai University 2012 June Tianjin China Lukasz Kurgan LA Disorder in Proteins: Current Characterization Efforts papers/GLBIO2012.pdf Great Lakes Bioinformatics Conference (GLBIO) http://www.iscb.org/glbio2012 2012 May Ann Arbor MI U.S.A. Zhenling Peng Z Marcin Mizianty MJ Lukasz Kurgan LA New Insights into Computational Disorder Prediction papers/PRSP2011.pdf Protein and RNA Structure Prediction Conference http://www.zingconferences.com/ 2011 December Riviera Maya Mexico Ke Chen K Lukasz Kurgan LA Structure-based Detection of Distant Functional Relations papers/MultiPole2011.pdf Multi-Pole Approach to Structural Biology http://iimcb.genesilico.pl/multipole/ 2011 November Warsaw Poland Marcin Mizianty MJ A. Bhargava A Artur de Brum-Fernandes AJ Jeff Dixon J Marianne Durand M Rene Harrison R Svetlana Komarova S Lukasz Kurgan LA M.F. Lucena-Fernandes MF Morris Monolson MF Stephen Sims S Multivariate Diagnostic Model for Osteoarthritis Highlights the Importance of Osteoclastogenesis and Expression of Interleukin 1 Receptors papers/CAN2011poster1.pdf Canadian Arthritis Network 2011 CAN Annual Scientific Conference http://arthritisnetwork.ca/events/conf_2011_en.php 2011 October Quebec City QC Canada S.M. Maria SM A. Bhargava A Artur de Brum-Fernandes AJ Jeff Dixon J Marianne Durand M Rene Harrison R Svetlana Komarova S Lukasz Kurgan LA M.F. Lucena-Fernandes MF Morris Monolson MF Marcin Mizianty MJ Stephen Sims S Mineral Homeostasis is Altered in Rheumatoid Arthritis Patients papers/CAN2011poster2.pdf Canadian Arthritis Network 2011 CAN Annual Scientific Conference http://arthritisnetwork.ca/events/conf_2011_en.php 2011 October Quebec City QC Canada Jody Groenendyk J Marcin J Mizianty MJ Lukasz Kurgan LA Marek Michalak M A Genome-wide siRNA Screen Identification of Proteins Involved in the Modulation of ER Stress papers/posterICW2011.pdf 9th International Calreticulin Workshop http://www.crt2011.com/ 2011 August Copenhagen Denmark Lukasz Kurgan LA Inverse Docking as a Platform to Elucidate Mechanisms Defining Adverse Reactions to Drugs 2011 China-Canada Annual Workshop on Mathematical Modeling of Infectious Diseases 2011 August Beijing China Marcin Mizianty MJ Wojciech Stach W Ke Chen K Kanaka Durga Kedarisetti KD Fatemeh Miri Disfani F Lukasz Kurgan LA Improved Sequence-based Prediction of Disordered Regions with Multilayer Fusion of Multiple Information Sources ECCB 9th European Conference on Computational Biology (ECCB) http://www.eccb10.org/ 2010 September Ghent Belgium Lukasz Kurgan LA In-silico Characterization of Crystallization Propensity of Protein Chains papers/presentationCrystallization2010.pdf Department of Computer Science at the Purdue University 2010 June West Lafayette IN U.S.A. Lukasz Kurgan LA Characterization of Crystallization Propensity of Protein Chains papers/presentationCrystallization2010.pdf Center for Computational Biology and Bioinformatics, IUPUI 2010 April Indianapolis IN U.S.A. Lukasz Kurgan LA Characterization of Crystallization Propensity of Protein Chains for Structural Genomics papers/presentationCrystallization2010.pdf Department of Automation at the Shanghai Jiao Tong University 2010 January Shanghai China Lukasz Kurgan LA Characterization of Crystallization Propensity of Protein Chains for Structural Genomics papers/presentationCrystallization2010.pdf Chern Institute of Mathematics at the Nankai University 2010 January Tianjin China Artur de Brum-Fernandes AJ Gilles Boire G Jeff Dixon J Marianne Durand M Rene Harrison R Svetlana Komarova S Lukasz Kurgan LA Morris Monolson MF Osama Maria O Marcin Mizianty MJ N Nabavi N Rafal Rak R M Roy M Stephen Sims S D.P. Trebec-Reynolds DP The in vitro osteoclast differentiation in arthritis (IODA) project: Osteoclastogenesis as a marker of presence and activity of disease in arthritis Canadian Rheumatology Association 2010 Canadian Rheumatology Association Annual Meeting http://www.rheum.ca/en/index.asp 2010 February Quebec City QC Canada Artur de Brum-Fernandes AJ Gilles Boire G Jeff Dixon J Marianne Durand M Rene Harrison R Svetlana Komarova S Lukasz Kurgan LA Morris Monolson MF Osama Maria O Marcin Mizianty MJ N Nabavi N Rafal Rak R M Roy M Stephen Sims S D.P. Trebec-Reynolds DP The In vitro Osteoclast Differentiation in Arthritis (IODA) project: Osteoclastogenesis as a Marker of Presence and Activity of Disease in Arthritis papers/CAN2009.pdf Canadian Arthritis Network 2009 CAN Annual Scientific Conference http://www.arthritisnetwork.ca/events/conf_2009_en.php 2009 November Vancouver BC Canada Lukasz Kurgan LA Crystallization propensity of protein chains papers/presentationICBBE2009.pdf Invited keynote presentation 3rd International Conference on Bioinformatics and Biomedical Engineering (iCBBE 2009) http://www.icbbe.org/2009/ 2009 June Beijing China Kanaka Kedarisetti K Marcin Mizianty MJ Scott Dick S Lukasz Kurgan LA ß-strand segments prediction based on protein sequence and predicted neighboring structural information papers/posterISMB2009.pdf ISCB (International Society for Computational Biology) 17th Annual International Conference on Intelligent Systems for Molecular Biology http://www.iscb.org/ismbeccb2009/ 2009 June-July Stockholm Sweden Lukasz Kurgan LA Jacek Tuszynski J Inverse docking as a platform to elucidate mechanisms defining adverse reactions to drugs papers/presentation2009CanadaChinaWorkshop.pdf Nankai University and MITACS 2009 China-Canada Biomedical Problem Solving Workshop http://bio.math.nankai.edu.cn/ccbps/ 2009 May Tianjin China Phillipe Dufort P Marianne Durand M Hugues Allard-Chamard H Maxime Gallant M Svetlana Komarova S Morris Monolson MF Rene Harrison R Jeff Dixon J Stephen Sims S Lukasz Kurgan LA Gilles Boire G Artur de Brum-Fernandes AJ Increased Osteoclastogenesis in Patients with Rheumatoid Arthritis papers/ACR2008.pdf Americal College of Rheumatology Arthritis and Rheumatism http://www3.interscience.wiley.com/journal/76509746/home 2008 October 58(9):S768-S768, (ACR'2008) San Francisco CA U.S.A. Artur de Brum-Fernandes AJ Gilles Boire G Jeff Dixon J Marianne Durand M Rene Harrison R Svetlana Komarova S Lukasz Kurgan LA Morris Monolson MF Osama Maria O Rafal Rak R M Roy M Stephen Sims S Osteoclastogenesis as a Marker of Presence and Activity of Disease in Rheumatoid Arthritis and Osteoarthritis papers/CAN2008.pdf Canadian Arthritis Network 2008 CAN Annual Scientific Conference http://www.arthritisnetwork.ca/events/conf_2008.php 2008 October Toronto ON Canada Ke Chen K Lukasz Kurgan LA Investigation of Atomic Level Patterns in Protein-ligand Interactions papers/posterISMB2008-2.pdf ISCB (International Society for Computational Biology) 16th Annual International Conference on Intelligent Systems for Molecular Biology http://www.iscb.org/ismb2008/ 2008 July Toronto ON Canada Kanaka Kedarisetti K Scott Dick S Lukasz Kurgan LA Ensembles of Secondary Structure Predictors for Sequence-based ß-residue Pair Prediction papers/posterISMB2008-1.pdf ISCB (International Society for Computational Biology) 16th Annual International Conference on Intelligent Systems for Molecular Biology http://www.iscb.org/ismb2008/ 2008 July Toronto ON Canada Artur de Brum-Fernandes AJ P Dufort P Gilles Boire G Jeff Dixon J M. Durand M Rene Harrison R Svetlana Komarova S Lukasz Kurgan LA Morris Monolson MF Rafal Rak R Stephen Sims S Osteoclast-related Biomarkers in Rheumatoid Arthritis papers/CCTC2008.pdf CCTC 14th Canadian Connective Tissue Conference http://cctc2008.mcgill.ca/index.html 2008 June Montreal Quebec Canada Mandana Rahbari M Dmitri Truhachev D Lukasz Kurgan LA Protein Content Prediction Based on Principal Component Analysis and Support Vector Machine Regression papers/MITACS2008.pdf MITACS Second Congress Canada-France 2008 http://www.cms.math.ca/Events/summer08/ 2008 June Montreal Quebec Canada Osama Maria O M. Durand M Artur de Brum-Fernandes AJ Gilles Boire G Morris Monolson MF Jeff Dixon J Stephen Sims S Rene Harrison R Lukasz Kurgan LA Svetlana Komarova S Investigations of Gene Expression in Osteoclasts Formed from Peripheral Blood Monocytes of Patients with Rheumatoid Arthritis papers/abstract2007CAN-1.pdf Canadian Arthritis Network 2007 CAN Annual Scientific Conference http://www.arthritisnetwork.ca/events/conf_2007.php 2007 October Halifax NS Canada Rafal Rak R Gilles Boire G Artur de Brum-Fernandes AJ Jeff Dixon J Rene Harrison R Svetlana Komarova S Morris Monolson MF Stephen Sims S Lukasz Kurgan LA Using Data Mining to Find Markers Related to the Role of Osteoclasts in Bone and Joint Destruction papers/abstract2007CAN-2.pdf Canadian Arthritis Network 2007 CAN Annual Scientific Conference http://www.arthritisnetwork.ca/events/conf_2007.php 2007 October Halifax NS Canada Kanaka Kedarisetti K Scott Dick S Lukasz Kurgan LA Searching for Factors Involved in Misfolding of the PrPC via In-silico Techniques papers/poster2007PrPCanada.pdf Alberta Prion Research Institute and PrioNet Canada PrPCanada 2007 http://www.prionmeeting.ca/ 2007 February Calgary AB Canada Lukasz Kurgan LA Discovering Structure in Data - Fast Classification Using the DataSqueezer Algorithm papers/presentationDS2006.pdf Chern Institute of Mathematics at the Nankai University 2006 June Tianjin China Lukasz Kurgan LA What, Why and How of Computational Protein Structure Prediction papers/presentationPIMS-MITACS2006.pdf Center for Mathematical Biology at the University of Alberta PIMS-MITACS Mathematical Biology Seminar Series http://www.math.ualberta.ca/~mathbio/events.html 2006 March Edmonton AB Canada Lukasz Kurgan LA Discovering Structure in the Data papers/presentationBIRS2005Tumours.pdf MITACS-MSRI-CMM sponsored meeting at the Banff International Research Station Workshop on Growth and Control of Tumours http://www.mitacs.ca/main.php?mid=10000162&pid=102&eventid=240 2005 October Banff AB Canada Alireza Farhangfar A Lukasz Kurgan LA Witold Pedrycz W Novel Method for Handling Missing Values in Databases Based on Mean Pre-Imputation, Confidence Intervals and Boosting papers/MITACS2004.pdf MITACS MITACS 5th Annual Conference http://www.mitacs.ca/goto/AC04/ 2004 June Halifax Nova Scotia Canada Lukasz Kurgan LA The Ensemble of Classifiers to Improve Accuracy of SPECT Heart Image Analysis System papers/presentationEnsemble2002.pdf University of Colorado Center for Computational Biology 2002 Annual Meeting Poster Session http://thunder1.cudenver.edu/ccb/main/home.php 2002 March Denver CO U.S.A. Lukasz Kurgan LA Data Mining and Knowledge Discovery papers/presentationDMKD2002.pdf University of Colorado at Denver, Department of Computer Science and Engineering the 2002 Computer Science Seminars http://www.cse.cudenver.edu/ 2002 March Denver CO U.S.A. Krzysztof Cios KJ Lukasz Kurgan LA S Mitchell S M Bailey M Dion Duckett D Kristy Gau K Report for the OAI Phase I Collaborative Core Research Project on Data Mining and Knowledge Discovery papers/presentationOIA2000.pdf Ohio Aerospace Institute (OAI) 2000 OAI Collaborations Forum http://www.oai.org/ 2000 Cleveland OH U.S.A. Lukasz Kurgan LA CLIP4 Inductive Machine Learning Algorithm papers/presentationCLIP42000.pdf University of Toledo 21 Annual Sigma Xi Graduate Research Symposium 2000 May Toledo OH U.S.A. Kanaka Durga Kedarisetti K Computational Prediction of Strand Residues from Protein Sequences Ph.D. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2012 Edmonton Alberta Canada Fatemeh Miri Disfani F Sequence-based prediction and characterization of disorder-to-order transitioning binding sites in proteins M.Sc. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2012 Edmonton Alberta Canada Ke Chen K In-silico Characterization and Prediction of Protein-Small Ligand Interactions Ph.D. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2011 Edmonton Alberta Canada Wojciech Stach W Learning and Aggregation of Fuzzy Cognitive Maps - an Evolutionary Approach Ph.D. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2010 Edmonton Alberta Canada Rafal Rak R Associative Classification, Linguistic Entity Relationship Extraction, and Description-Logic Representation of Biomedical Knowledge Applied to MEDLINE Ph.D. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2009 Edmonton Alberta Canada Mandana Rahbari M Hybrid Models for Protein Secondary Structure Content Prediction M.Sc. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2008 Edmonton Alberta Canada Leila Homaeian L Towards Improving Accuracy of Protein Content Prediction for Low Homology Sequences M.Sc. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2006 Edmonton Alberta Canada Kanaka Durga Kedarisetti K Computational Prediction of Three State Secondary Structure for Protein Structural Fragments M.Sc. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2005 Edmonton Alberta Canada Alireza Farhanghfar A New Framework for Imputation of Missing Values M.Sc. University of Alberta Electrical and Computer Engineering http://www.engineering.ualberta.ca/ece/ 2005 Edmonton Alberta Canada Lukasz Kurgan LA Meta Mining System for Supervised Learning papers/DissertationKurgan2003.pdf Ph.D. University of Colorado at Boulder Computer Science http://www.cs.colorado.edu/ 2003 Boulder CO U.S.A. Lukasz Kurgan LA Using Methods of Computerized Image Analysis and Processing for Diagnosis of SPECT Images to Help Diagnosing Coronary Artery Diseases M.Sc. AGH University of Science and Technology Automation and Robotics http://www.agh.edu.pl/index_e.html 1999 Krakow Poland